Thursday, November 17, 2011

Common VMD Tcl/Tk commands

mol modselect 0 0 resname BGLC and noh
mol modselect 0 1 resname BGLC and noh
mol modselect 0 2 resname BGLC and noh
mol modselect 0 3 resname BGLC and noh

mol smoothrep 0 0 5
mol smoothrep 1 0 5
mol smoothrep 2 0 5
mol smoothrep 3 0 5


mol modstyle 0 0 Licorice 0.300000 10.000000 10.000000

mol addrep 0
mol modselect 1 0 protein
mol modstyle  1 0 Licorice 0.300000 10.000000 10.000000
mol modstyle  1 0 vdw
mol smoothrep 1 1 5

mol off 0
mol off 1
mol off 2
mol off 3

mol showrep 0 0 0
mol showrep 0 0 1

color Display Background white

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